PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004509736.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family C3H
Protein Properties Length: 381aa    MW: 40749.5 Da    PI: 7.2575
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004509736.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH30.37e-1099123126
                     --S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                     +kt+lC+ f+  GtC+y  +C+FaH+
  XP_004509736.1  99 FKTKLCCKFRV-GTCPYVTNCNFAHS 123
                     69*********.*************8 PP

2zf-CCCH17.38.4e-06177202126
                     --S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                     yk + C+ f+    C+yG++C+F H+
  XP_004509736.1 177 YKGRHCKKFYTEEGCPYGESCTFLHD 202
                     77888********************7 PP

3zf-CCCH42.88.7e-14261286126
                     --S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                     +kt++C+ +  tG+C++G++C+FaHg
  XP_004509736.1 261 WKTRICNKWEMTGYCPFGNKCHFAHG 286
                     8************************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.108.2E-1496131IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.15E-896129IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.42798125IPR000571Zinc finger, CCCH-type
SMARTSM003560.002898124IPR000571Zinc finger, CCCH-type
PfamPF006422.3E-799123IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.6E-9173204IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.09E-7174204IPR000571Zinc finger, CCCH-type
SMARTSM003560.26176203IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.854176204IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.0E-16257290IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.02E-10257291IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.309260288IPR000571Zinc finger, CCCH-type
SMARTSM003568.8E-9260287IPR000571Zinc finger, CCCH-type
PfamPF006421.1E-10261286IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 381 aa     Download sequence    Send to blast
MDYSRDGNVV QIITAGGGGG DSWSSDQADW ATEDEYRYWN GNEAGETTPS SNSNCDQPRQ  60
QRSGSEPPSK KSRSNSQDNG GGSNGGGSNR AKAIGKMFFK TKLCCKFRVG TCPYVTNCNF  120
AHSVEELRRP PPNWQEIVAA HEEERSVFMN EQPREEFQIP TVGSSTFVGE SMNQRSYKGR  180
HCKKFYTEEG CPYGESCTFL HDEQSKNRES VAISLGPGGY GGGGGGSVGG GGGGSTGSGS  240
VGGGSAAAVG GNGANLKPSN WKTRICNKWE MTGYCPFGNK CHFAHGATEL HRYGGGLMEG  300
ESRDTASAVA SEAKQGVPSK THADNVVAST PPIAHSDVYH IGVPSQRPSI VSQRPGQRAH  360
QKWKGPDKIS RIYGDWIDDI E
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004509736.10.0PREDICTED: zinc finger CCCH domain-containing protein 12
SwissprotQ9LQM31e-127C3H12_ARATH; Zinc finger CCCH domain-containing protein 12
TrEMBLG7LH150.0G7LH15_MEDTR; Uncharacterized protein
STRINGGLYMA01G10610.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF77513342
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32360.11e-119C3H family protein